| Albert Einstein College of Medicine | $1,476,385,707 |
| Fordham University | $1,225,879,469 |
| Bronxcare Health System | $1,054,193,847 |
| St Barnabas Hospital | $603,257,963 |
| Wildlife Conservation Society | $400,861,377 |
| Montefiore Health System Inc | $383,138,560 |
| Acacia Network Housing Inc | $347,422,708 |
| Partners Health Plan Inc | $305,304,394 |
| Manhattan University | $210,138,327 |
| Urban Health Plan Inc | $193,602,619 |
| Food Bank for New York City | $173,505,104 |
| Horace Mann School | $146,409,893 |
| Neighborhood Association for Inter Cultural Affairs Inc | $142,477,197 |
| Bronxworks Inc | $133,938,301 |
| Calvary Hospital Inc | $129,793,014 |
| New York Botanical Garden | $124,690,916 |
| Bronx Parent Housing Network Inc | $121,047,982 |
| Childrens Rescue Fund | $115,002,009 |
| Hebrew Home for the Aged | $113,210,538 |
| Vip Community Services Inc | $106,723,784 |
| Riverdale Country School Inc | $103,715,166 |
| Catholic Guardian Services | $100,459,249 |
| Democracy Prep New York Charter Schools | $92,054,168 |
| Puerto Rican Orgnz to Motivate Enlighten & Serve Addicts Inc | $91,325,455 |
| Zeta Charter Schools - New York City | $88,248,316 |
| Montefiore Medicine Academic Health Self Insurance Trist | $85,266,481 |
| Morris Heights Health Center Inc | $82,571,421 |
| New York Institute for Special Education | $70,171,791 |
| Per Scholas Inc | $70,003,209 |
| The Bronx Defenders | $69,796,345 |
| Bronx Charter School for Excellence | $61,529,135 |
| Brilla College Preparatory Charter Schools | $58,333,946 |
| Zeta Charter Schools Inc | $56,578,257 |
| Union Community Health Center Inc | $50,826,787 |
| Family Life Academy Charter School | $50,508,744 |
| Bronxcare Dr Martin Luther King Jr Health Center | $47,869,939 |
| Public Prep Charter School Academies | $43,216,135 |
| United Odd Fellow and Rebekah Home | $43,165,863 |
| Classical Charter Schools | $42,876,260 |
| Centers for Care Health Plan | $38,058,725 |
| Argus Community Inc | $34,046,916 |
| The Woodlawn Cemetery | $28,098,711 |
| Seton Education Partners | $26,232,992 |